OBJECTIVE— To examine the associations between common variations in the IL6R gene and circulating interleukin (IL)-6 levels and diabetes risk.
RESEARCH DESIGN AND METHODS— We determined 10 linkage disequilibrium (LD)-tagging single nucleotide polymorphisms (SNPs) (SNP1 to SNP10) for the IL6R gene in a nested case-control study of 672 diabetic and 1,058 healthy European Caucasian women (IL-6 levels were measured in a subgroup of 1,348 women).
RESULTS— In both control and diabetic patients, polymorphisms within an LD block spanning ∼42 kb were significantly associated with plasma IL-6 levels. A missense variant SNP7 in exon 9 (rs8192284, Asp358Ala) showed the strongest association (P = 0.0005 in control and P = 0.004 in case subjects). The corresponding false-discovery rates, which accounts for multiple testing, were 0.008 and 0.02, respectively. We inferred five common haplotypes to capture 94% allele variance of the LD block using SNP5, -7, -8, -9, and -10. Compared with the most common haplotype 12111 (one codes the common and two codes the minor alleles), haplotypes 11211 [difference in log(IL-6) = −0.11 (95% CI −0.23 to −0.01); P = 0.01] and 21122 (−0.15 [−0.27 to −0.03]; P = 0.01) were associated with significantly lower IL-6 levels (global test, P = 0.01). However, IL6R genotypes were not significantly associated with the risk of type 2 diabetes.
CONCLUSIONS— IL6R genetic variations, especially SNP7 (rs8192284, Asp358Ala), were significantly associated with plasma IL-6 levels but not with diabetes risk in women. The strong associations between IL6R genetic variability and IL-6 concentrations deserve further investigation.
Interleukin (IL)-6 is a pleiotropic cytokine that performs as the chief stimulator of most acute-phase proteins (1) and has both proinflammatory and anti-inflammatory effects (2). There is compelling evidence that augmented levels of IL-6 are associated with several metabolic diseases, including type 2 diabetes and cardiovascular disease (3–6). IL-6 acts via a receptor complex consisting of two functional membrane proteins: an 80-kDa ligand-binding IL-6 receptor and a 130-kDa signal transducer (gp130) (7,8). Soluble and active forms of the extracellular domain of the IL-6 receptor, which is produced both by differential splicing of the IL-6 receptor transcript and by proteolytic cleavage of the protein in a process termed shedding, are also found in normal serum and synovial fluids. Most IL-6 action may be mediated through membrane-bound IL-6 receptors.
Several studies (9,10) have documented that IL6R gene variants were associated with obesity, insulin sensitivity (11), metabolic syndrome (12), and diabetes risk (13). However, few studies have used genetic markers that represent the overall variability of the gene, and the results are not consistent across populations. Moreover, little is known about whether IL6R variations affect the levels of circulating IL-6.
In this study, we selected linkage disequilibrium (LD)-tagging single nucleotide polymorphisms (SNPs) for the IL6R gene and also included a polymorphism (rs8192284) previously associated with functional changes of the IL6R gene and diabetes risk (13,14). We examined the associations between IL6R variations, plasma IL-6 levels, and diabetes risk in a nested case-control study of women from a prospective cohort, the Nurses’ Health Study.
RESEARCH DESIGN AND METHODS
The Nurses’ Health Study was established in 1976, when 121,700 female registered nurses aged 30–55 years and residing in 11 large U.S. states completed a mailed questionnaire on their medical history and lifestyle (15). The lifestyle factors, including smoking, menopausal status and postmenopausal hormone therapy, and body weight, have been updated by validated questionnaires every 2 years. Samples for the present case-control study were selected from a subcohort of 32,826 women who provided a blood sample between 1989 and 1990 and were free from diabetes, cardiovascular disease, stroke, or cancer at the time of blood collection. Incident cases were defined as self-reported diabetes confirmed by a validated supplementary questionnaire and diagnosed at least 1 year after blood collection through 2000. The supplementary questionnaire obtained information on symptoms, diagnostic tests, and hypoglycemic therapy used to define type 2 diabetic cases. Medical record review confirmed the diagnosis of type 2 diabetes using this questionnaire for 98% of cases using the National Diabetes Data Group criteria (16). We used the American Diabetes Association diagnostic criteria for diagnosis of diabetes cases during the 1998 and 2000 cycles (17).
The present study included 1,730 European Caucasian subjects, 672 incident case subjects, and 1,058 healthy control subjects, matched on age, month and year of blood draw, and fasting status. For the case subjects diagnosed in 1996 or earlier, two control subjects were matched to each case subject. One of two control subjects was also matched according to BMI (±1 kg/m2). For the case subjects diagnosed after 1996, one control subject was matched to each case subject. To improve statistical control for obesity at the upper extreme of the distribution, control women were also matched on BMI to case subjects in the top 10% of the BMI distribution (18).
Assessment of plasma IL-6 levels and covariates.
Blood sample collection and processing were previously described (6,19). Plasma concentrations of IL-6 were measured in a subset of women (642 diabetic case and 706 control subjects) using a quantitative sandwich enzyme immunoassay technique (Quantikine HS Immunoassay kit). The coefficient of variation was 5.9%. BMI was calculated as weight in kilograms divided by the square of height in meters. Physical activity was expressed as metabolic equivalent task (MET) hours based on self-reported types and durations of activities over the previous year.
Tagging SNP selection and genotype determination.
DNA was extracted from the buffy coat fraction of centrifuged blood using the QIAmp Blood Kit (Qiagen, Chatsworth, CA). Tagging SNPs for IL6R were selected from HapMap (HapMap Phase II, public release no. 19) using the pairwise tagging mode (20). We defined the common variants as those with minor allele frequency >5% and set the threshold of 0.8 for LD measure r2, at which all alleles are to be captured. Ten polymorphisms (rs4845618, rs12083537, rs4075015, rs6684439, rs4845622, rs8192284, rs4329505, rs4240872, rs2229238, and rs4845617) were genotyped using Taqman SNP allelic discrimination by means of an ABI 7900HT (Applied Biosystems, Foster City, CA). The genotyped polymorphisms are presented in Table 1. Replicate quality-control samples (10%) were included and genotyped with >99% concordance. For convenience, we named the polymorphisms SNP1 to SNP10 (Fig. 1).
Statistical analyses.
A χ2 test was used to assess whether the genotypes were in Hardy-Weinberg equilibrium and to compare the genotype and allele frequencies between case and control subjects. Odds ratios were calculated using the unconditional logistic regression model. General linear models were used to compare geometric mean values of quantitative traits across groups. Plasma IL-6 was not normally distributed and was logarithmically transformed to improve normality. We adjusted for covariates including age (continuous), BMI (<23, 23–24.9, 25–29.9, 30–34.9, or >35 kg/m2), physical activity (<1.5, 1.5–5.9, 6.0–11.9, 12–20.9, and > 21.0 MET h/week), smoking (never, past, and current), alcohol intake (nondrinker and drinker [0.1–4.9, 5–10, or >10 g/day]), family history of diabetes, and menopausal status (pre- or postmenopausal [never, past, or current hormone use]).
To account for multiple statistical testing, we calculated the false-discovery rate (FDR) for the analyses on the polymorphisms by the method of Benjamini and Hochberg (21) using SAS procedure PROC MULTTEST. FDR estimates the proportion of results declared positive that are actually false (22). The SAS statistical package was used for the analyses (SAS, version 8.2 for UNIX). Haplotype analysis was conducted based on the Stochastic-EM algorithm using the THESIAS program (23). Mendelian randomization instrumental variable analysis has been used to estimate the unconfounded causal effects in epidemiological studies (24,25). This approach bypasses the need to adjust for the confounders by estimating the average effect of biomarker levels on disease from two effects of the instrumental variable: 1) the average effect of the instrumental variable on disease and 2) the average effect of the instrumental variable on biomarker levels. We conducted Mendelian randomization analysis to estimate the association between IL-6 levels and diabetes risk, accounting for variances in both the IL6R genotype–IL-6 levels and genotype-diabetes associations using the Murphy-Topel method (26). We treated IL6R SNP7 as an instrumental variable for IL-6 levels. The QVF command in STATA 9.2 (STATA, College Station, TX) was used for instrumental variable analysis. All P values are two sided.
RESULTS
In healthy control subjects, the allele frequency of IL6R polymorphisms ranged from 0.17 to 0.43. All genotypes fit Hardy-Weinberg equilibrium. SNP4 to SNP10 were in strong LD (D′ >0.8), with pairwise r2 ranging from 0.05 to 0.95 (Fig. 1). This is consistent with the earlier-reported LD structure of the IL6R gene (11). The characteristics of the diabetes case and control subjects in the present study have been previously described (18,19). Plasma IL-6 levels were measured in a subgroup of women (642 diabetic patients and 706 control subjects). There was no significant difference in the basic characteristics between women with and without IL-6 measurement. Table 1 shows the age-adjusted baseline characteristics for women with IL-6 measurement available. Diabetic women had significantly higher IL-6 levels (log transformed) than the control subjects.
In control subjects, carriers of the minor allele at SNP4, SNP6, and SNP7 had significantly higher plasma IL-6 levels, whereas carriers of the minor allele at SNP5, SNP9, and SNP10 had significantly lower plasma IL-6 levels (Table 2). Adjustment for age, BMI, smoking, alcohol consumption, physical activity, family history of diabetes, and menopausal status did not appreciably change the associations. Similar but less significant associations between IL6R polymorphisms and IL-6 levels were also observed in the diabetic patients. We calculated FDR by the method of Benjamini and Hochberg (21) to adjust for the multiple testing. SNP7 (Asp358Ala) showed the strongest association with IL-6 levels with an FDR of 0.008 and 0.02 in the control women and diabetic patients, respectively. In nondiabetic women, the SNP7-associated difference in IL-6 levels was consistently significant across strata by obesity (30 kg/m2 as a cutoff), smoking (never versus current or past smoking), alcohol consumption (0 g/day as a cutoff), and physical activity (6.0 MET h/week as a cutoff) (Fig. 2). Tests for the interactions with these lifestyle factors were not significant.
Because haplotype analysis conserves joint LD structure and incorporates information from multiple adjacent genetic markers, it can be useful in narrowing down the culprit of the association. We inferred the haplotypes from the polymorphisms within the LD block (SNP4 to SNP10, ∼42 kb). Because SNP4, SNP6, and SNP7 are nearly completely correlated (r2 > 0.9; Fig. 1), only SNP7 was kept in haplotype inference, together with SNP5, SNP8, SNP9, and SNP10. Five common haplotypes accounted for ∼94% allele variance of the LD block. We treated the most common haplotype 12111 as the reference. All other common haplotypes, differed by SNP7 from haplotype 12111, were associated with lower IL-6 levels compared with haplotype 12111 in nondiabetic women (Table 3). This indicated that SNP7 might be in strong LD with a SNP that could be the causal variant contributing to the elevated IL-6 levels.
We further examined the associations between IL6R polymorphisms and diabetes risk. The distributions of IL6R genotypes were not significantly different in diabetic patients and the control subjects (Table 4). Also, the IL6R haplotypes were not significantly associated with the risk of diabetes (data not shown). Adjustment for the IL-6 levels and other covariates did not appreciably change the results. Logistic regression analyses indicated that IL-6 levels were significantly associated with diabetes risk, with an odds ratio of 1.78 (95% CI 1.49–2.10) per unit change of log(IL-6). In the Mendelian randomization instrumental variable analysis, using SNP7 as an instrument for IL-6 concentration, the estimated causal effect was an odds ratio of 1.59 (0.45–5.66) for diabetic risk per unit change of log(IL-6).
DISCUSSION
We found significant associations between IL6R variations, especially SNP7 (rs8192284) and plasma IL-6 levels. Our results are highly consistent with a recent study (27). Reich et al. (27) conducted an admixture mapping in 1,184 African Americans and a replication association study in 1,674 European Americans from the Health ABC study, in which IL6R variant rs8192284 (SNP7 in our study) was found to be strongly and significantly associated with higher IL-6 levels, in addition to elevated IL-6 soluble receptor levels.
The independent findings from our study and Reich et al.'s study (27) and the close functional relatedness between the IL6R gene and IL-6 activity strongly support a causal relation between IL6R genetic variability and IL-6 homeostasis. Moreover, following several lines of evidence indicate that our results are less likely due to chance: 1) The observed associations were robust and survived the adjustment for multiple testing. The FDR method controls the expected proportion of false-positives among all positive results over multiple testing (28,29). This method is thought to be an efficient approach for multiple-comparison adjustment and has been widely used in the genetic association studies (30,31). The low value of FDR (e.g., <0.05 or 0.10) usually suggests that the observed associations is less likely a false signal. 2) The genotype-associated differences in IL-6 were consistently observed in both healthy and diabetic women and were independent of adiposity and lifestyle confounders. Several polymorphisms in the IL6R gene, which are in strong LD, were associated with IL-6 levels. Results from the haplotype analyses suggested that SNP7 was the principal polymorphism contributing to the elevation of IL-6 levels.
There is some evidence that IL-6 production is genetically influenced (32). However, little is known about the genes regulating IL-6 homeostasis. Data on the relation between variations in the IL6 gene, which encodes IL-6, and IL-6 levels are conflicting (33–35). In an earlier analysis of U.S. women, we did not find significant associations between IL6 genetic variability and IL-6 levels (19). This suggests that other chromosome loci may account for the interindividual variance. Our results from the present study and the findings from Reich et al.'s study (27) together suggest that IL6R may be a potential candidate gene for IL-6 homeostasis.
The association between IL6R variants and IL-6 levels appeared less evident in the diabetic than in the healthy women. Diabetes represents a constellation of many metabolic abnormalities, such as hyperglycemia and insulin resistance, as well as elevated inflammation response. We suspect that these metabolic and inflammation changes may affect the expression of IL-6 and thus dilute the genetic effects of IL6R variants.
Hamid et al. (13) reported that the amino acid change variant Asp358Ala (SNP7) was associated with risk of type 2 diabetes in Danish whites under a recessive inheritance model. However, IL6R variations were not associated with diabetes in Pima Indians and North European whites (9,11), as well as in our study sample of U.S. women. Given the sample size of the present study, we had >80% power to identify an odds ratio of ≥1.25, but our study may be underpowered to identify the weaker genetic effects. In addition, we did not find significant associations between IL6R variations and adiposity (data not shown). It was reported that variant Asp358Ala (SNP7) was associated with BMI in Pima Indians (9). However, the relations between IL6R variations and adiposity were not found in some other studies (11,13).
The discrepancy between various studies may be partly attributed to the population heterogeneity, different confounding structure, and varying study power. It is believed that many susceptibility genes may predispose to diabetes, while the contribution of individual genes is likely to be moderate. We suspect that the metabolic changes solely related to IL6R variations may not be sufficient to lead to transition from subclinical to clinical disease. This is very similar to the recent observations that CRP genotypes were strongly associated with plasma C-reactive protein concentration but were weakly related to cardiovascular risk (36,37).
According to the theory of Mendelian randomization (38), the IL6R genotype may represent an instrument for IL-6 levels that is free from reverse causation bias and confounding. Therefore, if the association between IL-6 levels and diabetes is causal, then IL6R variants should be related to diabetes risk. The lack of associations between IL6R variants and diabetes risk suggests that the observed associations between circulating IL-6 and diabetes (3,4,6,39) may be due to reverse association or confounding rather than causality. Confounding may bias the relation between IL-6 levels and diabetes risk. The results from the Mendelian randomization instrumental variable analysis, however, were inconclusive. The point estimate for the instrumental variable (albeit nonsignificant) did not substantially differ from that obtained from the primary analyses. Thus, based on the instrumental variable analyses, we could not determine whether the positive association between IL-6 concentration and diabetes risk is causal or not. A larger sample size is needed to elucidate the causal effects. Moreover, it has yet to be demonstrated that the IL6R genotype a good instrumental variable for IL-6 levels (i.e., IL-6 is the only mediator for IL6R genetic effect on diabetes). Little is known about whether IL6R variants affect other metabolic changes (pleiotropy) related to the development of diabetes. Therefore, we cannot exclude the possibility that other mechanisms may play a role, which may distort the association between IL6R genotype and diabetes risk. Finally, a significant association between IL-6 level and diabetes risk has been observed in several large prospective studies (3,4), which lowers the likelihood that the changes of IL-6 levels are the consequence of diabetes.
More evidence, from both epidemiological and experimental studies, is warranted to elucidate whether the changes in IL-6 levels are causally involved in the development of diabetes. Diabetes, as a disorder of hyperglycemia, can induce inflammatory response, especially through overproduction of reactive oxygen species (40,41). Experiments assessing the effects of hyperglycemia on the expression of IL-6 may help to clarify the mechanisms. It is also informative to compare plasma IL-6 concentrations before and after the development of diabetes in a prospective setting.
Several limitations need to be considered. The population stratification may bias the observed associations. However, our study population is highly homogeneous by including only European whites, lessening concerns about this source of bias as a potential cause of spurious associations. In addition, our analyses were restricted to women and therefore may not be generalized to men.
Low-grade systemic inflammation is involved in the pathogenetic processes causing type 2 diabetes. IL-6 may affect insulin secretion (42) and induce insulin resistance (43,44). IL-6 levels predicted diabetes in several prospective studies (3,4). These observations may reflect a pathogenic role of IL-6 in diabetes. Although our data suggest that IL6R variants are not directly associated with diabetes risk, our findings are important in clarifying the complex relationships between IL6R variants, plasma IL-6 concentrations, and diabetes risk.
In summary, we found that common variations in the IL6R gene, especially SNP7 (rs8192284, Asp358Ala), were significantly associated with plasma IL-6 levels. However, the IL6R variations were not significantly related to diabetes risk in U.S. women. Further research is warranted to replicate the associations in other populations and to elucidate the potential mechanisms.
. | Healthy control subjects . | Diabetic patients . | P . |
---|---|---|---|
n | 706 | 642 | |
Age (years) | 56 ± 8 | 56 ± 8 | 0.90 |
BMI (kg/m2) | 26.5 ± 6.2 | 30.6 ± 5.6 | <0.001 |
Physical activity (MET h/week) | 14.9 ± 17.8 | 12.2 ± 15.0 | 0.003 |
Alcohol consumption (g/day) | 5.80 ± 9.87 | 2.83 ± 6.57 | <0.001 |
Current smoker (%) | 11.7 | 12.9 | 0.48 |
Postmenopausal status (%) | 78.9 | 81.3 | 0.27 |
Log(IL-6) (ng/ml) | 0.64 ± 0.70 | 0.90 ± 0.69 | <0.001 |
. | Healthy control subjects . | Diabetic patients . | P . |
---|---|---|---|
n | 706 | 642 | |
Age (years) | 56 ± 8 | 56 ± 8 | 0.90 |
BMI (kg/m2) | 26.5 ± 6.2 | 30.6 ± 5.6 | <0.001 |
Physical activity (MET h/week) | 14.9 ± 17.8 | 12.2 ± 15.0 | 0.003 |
Alcohol consumption (g/day) | 5.80 ± 9.87 | 2.83 ± 6.57 | <0.001 |
Current smoker (%) | 11.7 | 12.9 | 0.48 |
Postmenopausal status (%) | 78.9 | 81.3 | 0.27 |
Log(IL-6) (ng/ml) | 0.64 ± 0.70 | 0.90 ± 0.69 | <0.001 |
Data are means ± SD or percent.
. | Healthy women . | . | . | P* . | FDR . | Diabetic women . | . | . | P* . | FDR . | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
. | 11 . | 12 . | 22 . | . | . | 11 . | 12 . | 22 . | . | . | ||||
SNP1 | 246 | 317 | 114 | 223 | 299 | 99 | ||||||||
0.66 ± 0.04 | 0.61 ± 0.04 | 0.68 ± 0.06 | 0.51 | 0.60 | 0.85 ± 0.04 | 0.92 ± 0.04 | 0.86 ± 0.07 | 0.34 | 0.45 | |||||
SNP2 | 409 | 243 | 37 | 394 | 208 | 25 | ||||||||
0.64 ± 0.03 | 0.62 ± 0.04 | 0.76 ± 0.11 | 0.94 | 0.94 | 0.92 ± 0.03 | 0.85 ± 0.05 | 0.99 ± 0.14 | 0.29 | 0.41 | |||||
SNP3 | 222 | 357 | 112 | 215 | 303 | 110 | ||||||||
0.61 ± 0.05 | 0.66 ± 0.04 | 0.68 ± 0.07 | 0.38 | 0.47 | 0.88 ± 0.04 | 0.91 ± 0.04 | 0.87 ± 0.06 | 0.62 | 0.69 | |||||
SNP4 | 238 | 341 | 107 | 235 | 309 | 87 | ||||||||
0.54 ± 0.04 | 0.67 ± 0.04 | 0.76 ± 0.07 | 0.005 | 0.02 | 0.81 ± 0.04 | 0.90 ± 0.04 | 1.10 ± 0.07 | 0.018 | 0.05 | |||||
SNP5 | 215 | 345 | 114 | 176 | 325 | 119 | ||||||||
0.72 ± 0.05 | 0.63 ± 0.04 | 0.50 ± 0.06 | 0.039 | 0.07 | 0.99 ± 0.05 | 0.90 ± 0.04 | 0.77 ± 0.06 | 0.035 | 0.07 | |||||
SNP6 | 225 | 355 | 105 | 225 | 312 | 96 | ||||||||
0.51 ± 0.05 | 0.68 ± 0.04 | 0.75 ± 0.07 | 0.0008 | 0.008 | 0.80 ± 0.04 | 0.91 ± 0.04 | 1.08 ± 0.07 | 0.01 | 0.03 | |||||
SNP7 | 239 | 347 | 105 | 227 | 308 | 88 | ||||||||
0.51 ± 0.04 | 0.69 ± 0.04 | 0.76 ± 0.07 | 0.0005 | 0.008 | 0.79 ± 0.04 | 0.91 ± 0.04 | 1.11 ± 0.07 | 0.004 | 0.02 | |||||
SNP8 | 476 | 197 | 17 | 448 | 171 | 12 | ||||||||
0.65 ± 0.03 | 0.64 ± 0.05 | 0.45 ± 0.17 | 0.66 | 0.69 | 0.92 ± 0.03 | 0.80 ± 0.05 | 1.19 ± 0.18 | 0.12 | 0.20 | |||||
SNP9 | 405 | 253 | 27 | 362 | 237 | 32 | ||||||||
0.69 ± 0.03 | 0.57 ± 0.04 | 0.53 ± 0.13 | 0.02 | 0.05 | 0.96 ± 0.03 | 0.82 ± 0.04 | 0.74 ± 0.11 | 0.008 | 0.03 | |||||
SNP10 | 462 | 218 | 17 | 412 | 198 | 19 | ||||||||
0.68 ± 0.03 | 0.55 ± 0.05 | 0.64 ± 0.17 | 0.026 | 0.06 | 0.92 ± 0.03 | 0.86 ± 0.05 | 0.65 ± 0.15 | 0.23 | 0.35 |
. | Healthy women . | . | . | P* . | FDR . | Diabetic women . | . | . | P* . | FDR . | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
. | 11 . | 12 . | 22 . | . | . | 11 . | 12 . | 22 . | . | . | ||||
SNP1 | 246 | 317 | 114 | 223 | 299 | 99 | ||||||||
0.66 ± 0.04 | 0.61 ± 0.04 | 0.68 ± 0.06 | 0.51 | 0.60 | 0.85 ± 0.04 | 0.92 ± 0.04 | 0.86 ± 0.07 | 0.34 | 0.45 | |||||
SNP2 | 409 | 243 | 37 | 394 | 208 | 25 | ||||||||
0.64 ± 0.03 | 0.62 ± 0.04 | 0.76 ± 0.11 | 0.94 | 0.94 | 0.92 ± 0.03 | 0.85 ± 0.05 | 0.99 ± 0.14 | 0.29 | 0.41 | |||||
SNP3 | 222 | 357 | 112 | 215 | 303 | 110 | ||||||||
0.61 ± 0.05 | 0.66 ± 0.04 | 0.68 ± 0.07 | 0.38 | 0.47 | 0.88 ± 0.04 | 0.91 ± 0.04 | 0.87 ± 0.06 | 0.62 | 0.69 | |||||
SNP4 | 238 | 341 | 107 | 235 | 309 | 87 | ||||||||
0.54 ± 0.04 | 0.67 ± 0.04 | 0.76 ± 0.07 | 0.005 | 0.02 | 0.81 ± 0.04 | 0.90 ± 0.04 | 1.10 ± 0.07 | 0.018 | 0.05 | |||||
SNP5 | 215 | 345 | 114 | 176 | 325 | 119 | ||||||||
0.72 ± 0.05 | 0.63 ± 0.04 | 0.50 ± 0.06 | 0.039 | 0.07 | 0.99 ± 0.05 | 0.90 ± 0.04 | 0.77 ± 0.06 | 0.035 | 0.07 | |||||
SNP6 | 225 | 355 | 105 | 225 | 312 | 96 | ||||||||
0.51 ± 0.05 | 0.68 ± 0.04 | 0.75 ± 0.07 | 0.0008 | 0.008 | 0.80 ± 0.04 | 0.91 ± 0.04 | 1.08 ± 0.07 | 0.01 | 0.03 | |||||
SNP7 | 239 | 347 | 105 | 227 | 308 | 88 | ||||||||
0.51 ± 0.04 | 0.69 ± 0.04 | 0.76 ± 0.07 | 0.0005 | 0.008 | 0.79 ± 0.04 | 0.91 ± 0.04 | 1.11 ± 0.07 | 0.004 | 0.02 | |||||
SNP8 | 476 | 197 | 17 | 448 | 171 | 12 | ||||||||
0.65 ± 0.03 | 0.64 ± 0.05 | 0.45 ± 0.17 | 0.66 | 0.69 | 0.92 ± 0.03 | 0.80 ± 0.05 | 1.19 ± 0.18 | 0.12 | 0.20 | |||||
SNP9 | 405 | 253 | 27 | 362 | 237 | 32 | ||||||||
0.69 ± 0.03 | 0.57 ± 0.04 | 0.53 ± 0.13 | 0.02 | 0.05 | 0.96 ± 0.03 | 0.82 ± 0.04 | 0.74 ± 0.11 | 0.008 | 0.03 | |||||
SNP10 | 462 | 218 | 17 | 412 | 198 | 19 | ||||||||
0.68 ± 0.03 | 0.55 ± 0.05 | 0.64 ± 0.17 | 0.026 | 0.06 | 0.92 ± 0.03 | 0.86 ± 0.05 | 0.65 ± 0.15 | 0.23 | 0.35 |
Data are n or means±SE. For each polymorphism, 11 represents the major allele homozygotes, 12 represents the heterozygotes, and 22 represents the minor allele homozygotes; missing genotyping is not included.
Comparisons between carriers and noncarriers; adjusted for age, BMI, alcohol consumption, smoking, physical activity, family history of diabetes, and menopausal status.
Haplotypes . | . | . | . | . | Frequency . | Difference in log(IL-6) (95% CI) . | P . | Global P . | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP5 . | SNP7 . | SNP8 . | SNP9 . | SNP10 . | . | . | . | . | ||||
1 | 2 | 1 | 1 | 1 | 37.6 | 0.0 | ||||||
1 | 1 | 2 | 1 | 1 | 15.8 | −0.11 (−0.23 to −0.01) | 0.05 | 0.01 | ||||
2 | 1 | 1 | 1 | 1 | 18.2 | −0.12 (−0.22 to −0.03) | 0.01 | |||||
2 | 1 | 1 | 2 | 1 | 4.6 | −0.17 (−0.38 to 0.04) | 0.12 | |||||
2 | 1 | 1 | 2 | 2 | 17.5 | −0.15 (−0.27 to −0.03) | 0.01 |
Haplotypes . | . | . | . | . | Frequency . | Difference in log(IL-6) (95% CI) . | P . | Global P . | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP5 . | SNP7 . | SNP8 . | SNP9 . | SNP10 . | . | . | . | . | ||||
1 | 2 | 1 | 1 | 1 | 37.6 | 0.0 | ||||||
1 | 1 | 2 | 1 | 1 | 15.8 | −0.11 (−0.23 to −0.01) | 0.05 | 0.01 | ||||
2 | 1 | 1 | 1 | 1 | 18.2 | −0.12 (−0.22 to −0.03) | 0.01 | |||||
2 | 1 | 1 | 2 | 1 | 4.6 | −0.17 (−0.38 to 0.04) | 0.12 | |||||
2 | 1 | 1 | 2 | 2 | 17.5 | −0.15 (−0.27 to −0.03) | 0.01 |
Haplotype coding: 1 represents the common allele and 2 represents the minor allele; analyses were adjusted for age and BMI.
SNPs . | Gene region . | Genotypes . | Frequency . | . | P value . | FDR . | |
---|---|---|---|---|---|---|---|
. | . | . | Case subjects . | Control subjects . | . | . | |
SNP1 | Exon 1 | GG | 238 (36.6) | 347 (34.0) | 0.43 | 0.84 | |
GA | 311 (47.8) | 493 (48.3) | |||||
AA | 102 (15.6) | 180 (17.7) | |||||
SNP2 | Intron 1 | TT | 414 (63.0) | 625 (60.3) | 0.42 | 0.84 | |
TC | 215 (32.7) | 357 (34.4) | |||||
CC | 28 (4.3) | 55 (5.3) | |||||
SNP3 | Intron 1 | TT | 223 (33.9) | 353 (34.1) | 0.59 | 0.84 | |
TA | 315 (47.9) | 513 (49.6) | |||||
AA | 119 (18.1) | 168 (16.3) | |||||
SNP4 | Intron 1 | CC | 241 (36.5) | 372 (36.0) | 0.55 | 0.84 | |
CT | 327 (49.5) | 498 (48.2) | |||||
TT | 92 (14.0) | 164 (15.8) | |||||
SNP5 | Intron 1 | AA | 185 (28.6) | 323 (31.7) | 0.34 | 0.84 | |
AC | 338 (52.3) | 521 (51.2) | |||||
CC | 123 (19.1) | 174 (17.1) | |||||
SNP6 | Intron 6 | TT | 231 (34.9) | 354 (34.3) | 0.97 | 0.97 | |
TG | 330 (49.8) | 518 (50.2) | |||||
GG | 101 (15.3) | 160 (15.5) | |||||
SNP7 | Exon 9 | AA | 233 (35.7) | 372 (35.9) | 0.96 | 0.97 | |
AC | 327 (50.1) | 510 (49.1) | |||||
CC | 93 (14.2) | 156 (15.0) | |||||
SNP8 | Intron 9 | TT | 471 (71.3) | 715 (68.8) | 0.16 | 0.84 | |
TC | 178 (26.9) | 290 (27.9) | |||||
CC | 12 (1.8) | 34 (3.3) | |||||
SNP9 | Intron 9 | AA | 375 (56.8) | 614 (59.4) | 0.58 | 0.84 | |
AG | 252 (38.2) | 372 (36.0) | |||||
GG | 33 (5.0) | 48 (4.6) | |||||
SNP10 | Exon 10 | GG | 426 (64.6) | 696 (66.5) | 0.88 | 0.97 | |
(3′ untranslated region) | GA | 213 (32.3) | 321 (30.7) | ||||
AA | 20 (3.1) | 29 (2.8) |
SNPs . | Gene region . | Genotypes . | Frequency . | . | P value . | FDR . | |
---|---|---|---|---|---|---|---|
. | . | . | Case subjects . | Control subjects . | . | . | |
SNP1 | Exon 1 | GG | 238 (36.6) | 347 (34.0) | 0.43 | 0.84 | |
GA | 311 (47.8) | 493 (48.3) | |||||
AA | 102 (15.6) | 180 (17.7) | |||||
SNP2 | Intron 1 | TT | 414 (63.0) | 625 (60.3) | 0.42 | 0.84 | |
TC | 215 (32.7) | 357 (34.4) | |||||
CC | 28 (4.3) | 55 (5.3) | |||||
SNP3 | Intron 1 | TT | 223 (33.9) | 353 (34.1) | 0.59 | 0.84 | |
TA | 315 (47.9) | 513 (49.6) | |||||
AA | 119 (18.1) | 168 (16.3) | |||||
SNP4 | Intron 1 | CC | 241 (36.5) | 372 (36.0) | 0.55 | 0.84 | |
CT | 327 (49.5) | 498 (48.2) | |||||
TT | 92 (14.0) | 164 (15.8) | |||||
SNP5 | Intron 1 | AA | 185 (28.6) | 323 (31.7) | 0.34 | 0.84 | |
AC | 338 (52.3) | 521 (51.2) | |||||
CC | 123 (19.1) | 174 (17.1) | |||||
SNP6 | Intron 6 | TT | 231 (34.9) | 354 (34.3) | 0.97 | 0.97 | |
TG | 330 (49.8) | 518 (50.2) | |||||
GG | 101 (15.3) | 160 (15.5) | |||||
SNP7 | Exon 9 | AA | 233 (35.7) | 372 (35.9) | 0.96 | 0.97 | |
AC | 327 (50.1) | 510 (49.1) | |||||
CC | 93 (14.2) | 156 (15.0) | |||||
SNP8 | Intron 9 | TT | 471 (71.3) | 715 (68.8) | 0.16 | 0.84 | |
TC | 178 (26.9) | 290 (27.9) | |||||
CC | 12 (1.8) | 34 (3.3) | |||||
SNP9 | Intron 9 | AA | 375 (56.8) | 614 (59.4) | 0.58 | 0.84 | |
AG | 252 (38.2) | 372 (36.0) | |||||
GG | 33 (5.0) | 48 (4.6) | |||||
SNP10 | Exon 10 | GG | 426 (64.6) | 696 (66.5) | 0.88 | 0.97 | |
(3′ untranslated region) | GA | 213 (32.3) | 321 (30.7) | ||||
AA | 20 (3.1) | 29 (2.8) |
Data are n (%), unless otherwise indicated. The missing genotyping is not counted.
Published ahead of print at http://diabetes.diabetesjournals.org on 19 September 2007. DOI: 10.2337/db07-0505.
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Article Information
This study was supported by National Institutes of Health Grants DK58845 and CA87969. L.Q. is supported by an American Heart Association Scientist Development Grant Award (0730094N).