Cardiovascular disease and diabetes are influenced by potentially many exposures; however, traditional epidemiological studies examine but a few candidate factors at a time. Here, we demonstrate a pipeline for identifying exposures, made efficient by integrating genetic data at biobank scale. First, we conducted an Exposure-Wide Association Study (ExWAS) to systematically identify observational associations across 362 exposures in type 2 diabetes [T2D] and coronary artery disease [CAD] in participants of the UK Biobank. Causality estimates between exposure-disease phenotype pairs using bi-directional Two-Sample Mendelian Randomization [MR] across two large biobanks, UK Biobank and FinnGen, were computed. For CAD, we identified 172 (47.5%) FDR-significant exposure factors and for type 2 diabetes we identified 224 (61.9%) factors, finding 157 in both. We were able to deduce genetic-based causality between 14 (out of 172 ExWAS-identified) in CAD and 16 (out of 224) in T2D. Among the MR-validated associations for CAD, we report the interquartile range (IQR) of ExWAS and MR-derived odds ratios to be [0.742, 0.892] and [0.389, 0.711], respectively. For T2D, we report the IQR to be [0.658, 0.897] and [0.277, 0.669] for ExWAS and MR-derived odds ratios (OR), respectively. For example, we found having a college or university degree is causally inversely associated with CAD (MR beta estimate = -0.569, MR p-value = 3.51x10-5). However, we found low specificity (37.3 % for CAD and 26.3% for T2D) suggesting that most ExWAS-identified (or observational) associations are confounded. We find three MR-validated associations for T2D and one MR-validated association for CAD to be strongly mediated by causal risk factors (e.g., Body Mass Index[BMI]). Biobank samples, replete with clinical, exposure and genetic information enhance identification of exposures for metabolic disease and their mediators.

Disclosure

C. Patel: None. S. Tangirala: None.

Funding

National Institutes of Health (R01ES032470)

Readers may use this article as long as the work is properly cited, the use is educational and not for profit, and the work is not altered. More information is available at http://www.diabetesjournals.org/content/license.