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TABLE 1

Common USF1 SNPs genotyped in our type 2 diabetic case-control cohort

dbSNP IDGene regionPosition*AllelesMAF
rs2516837 intron 1 1030 C/T 0.44 
rs1556259 intron 1 1108 T/C 0.19 
rs2516838 intron 1 1387 G/C 0.29 
rs2073653 intron 2 2997 A/G 0.11 
rs2774276 intron 5 4041 G/C 0.27 
rs2516841 intron 7 4983 G/A 0.31 
rs2073658 intron 7 4995 G/A 0.23 
rs3737787 3′ UTR 6234 C/T 0.24 
dbSNP IDGene regionPosition*AllelesMAF
rs2516837 intron 1 1030 C/T 0.44 
rs1556259 intron 1 1108 T/C 0.19 
rs2516838 intron 1 1387 G/C 0.29 
rs2073653 intron 2 2997 A/G 0.11 
rs2774276 intron 5 4041 G/C 0.27 
rs2516841 intron 7 4983 G/A 0.31 
rs2073658 intron 7 4995 G/A 0.23 
rs3737787 3′ UTR 6234 C/T 0.24 
*

Position relative to the first nucleotide of the National Center for Biotechnology Information RefSeq USF1 mRNA sequence (NM_007122). Note that USF1 is transcribed in the reverse orientation relative to the reference human genome sequence (chromosome 1 nucleotides: 157,828,830–157,822,115). MAFs were taken from Pajukanta et al. (3). The USF1 gene spans 11 exons and 6.7 kb, with a genomic structure as follows: exon 1, nucleotides 1–110; exon 2, 2608–2700 (ATG codon 2693–2695); exon 3, 3086–3135; exon 4, 3298–3413; exon 5, 3751–3852; exon 6, 4122–4317; exon 7, 4557–4644; exon 8, 5096–5154; exon 9, 5298–5392; exon 10, 5638–5766; and exon 11, 5959–6716 (TAA codon 6046–6048). MAF, minor allele frequency.

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