American Diabetes Association

TABLE 2

SNP characteristics among BetaGene and IRASFS participants

	Chromosome	kb Position^*	Reference allele^†	Reference allele frequency^‡
								BetaGene	IRASFS
								BetaGene		San Antonio	San Luis Valley
PPARG2
Pro12Ala (rs1801282)	3	12368125	Ala	0.103	0.118	0.100
HNF4A
rs4810424	20	42408437	C	0.500	0.459	0.481
rs1884613	20	42413829	G	0.501	0.451	0.481
rs1884614	20	42413933	T	0.499	0.456	0.481
rs2144908	20	42419131	A	0.503	0.453	0.472
rs6031551	20	42423128	C	0.116	—	—
rs6031552	20	42423208	A	0.107	—	—
rs2425637	20	42457463	T	0.608	0.640	0.622
rs2425640	20	42461451	A	0.202	0.139	0.149
rs1885088	20	42472454	A	0.199	0.169	0.238

	Chromosome	kb Position^*	Reference allele^†	Reference allele frequency^‡
								BetaGene	IRASFS
								BetaGene		San Antonio	San Luis Valley
PPARG2
Pro12Ala (rs1801282)	3	12368125	Ala	0.103	0.118	0.100
HNF4A
rs4810424	20	42408437	C	0.500	0.459	0.481
rs1884613	20	42413829	G	0.501	0.451	0.481
rs1884614	20	42413933	T	0.499	0.456	0.481
rs2144908	20	42419131	A	0.503	0.453	0.472
rs6031551	20	42423128	C	0.116	—	—
rs6031552	20	42423208	A	0.107	—	—
rs2425637	20	42457463	T	0.608	0.640	0.622
rs2425640	20	42461451	A	0.202	0.139	0.149
rs1885088	20	42472454	A	0.199	0.169	0.238

*

Based on National Center for Biotechnology Information build 36.1.

†

Minor allele for Finns in FUSION (16).

‡

Allele frequency of BetaGene reference allele.