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TABLE 1

Allelic frequencies for SNPs in an obesity case-control material

SNPMajor/minor alleleLean
Obese
McNeamar P valueχ2Permutation P value
1212
rs9626055 C/T 0.979 0.021 0.979 0.021 1.00 0.0 1.00 
rs2076212* Gly/Cys (G/T) 0.891 0.109 0.882 0.118 0.65 0.31 1.00 
rs738409* Ile/Met (C/G) 0.733 0.267 0.788 0.212 0.023 5.14 0.19 
rs5764034 C/A 0.622 0.378 0.597 0.403 0.34 0.67 0.99 
rs2076211 C/T 0.792 0.208 0.848 0.152 0.016 5.87 0.13 
rs2072907* G/C 0.759 0.241 0.835 0.165 0.0013 9.84 0.015 
rs1010022 A/G 0.767 0.233 0.840 0.160 0.0023 9.09 0.021 
rs3810622* T/C 0.601 0.399 0.552 0.448 0.082 3.01 0.52 
rs2294919 C/T 0.780 0.220 0.748 0.252 0.22 1.87 0.79 
SNPMajor/minor alleleLean
Obese
McNeamar P valueχ2Permutation P value
1212
rs9626055 C/T 0.979 0.021 0.979 0.021 1.00 0.0 1.00 
rs2076212* Gly/Cys (G/T) 0.891 0.109 0.882 0.118 0.65 0.31 1.00 
rs738409* Ile/Met (C/G) 0.733 0.267 0.788 0.212 0.023 5.14 0.19 
rs5764034 C/A 0.622 0.378 0.597 0.403 0.34 0.67 0.99 
rs2076211 C/T 0.792 0.208 0.848 0.152 0.016 5.87 0.13 
rs2072907* G/C 0.759 0.241 0.835 0.165 0.0013 9.84 0.015 
rs1010022 A/G 0.767 0.233 0.840 0.160 0.0023 9.09 0.021 
rs3810622* T/C 0.601 0.399 0.552 0.448 0.082 3.01 0.52 
rs2294919 C/T 0.780 0.220 0.748 0.252 0.22 1.87 0.79 

Data are presented as frequency. P values calculated using McNemar test. P values <0.05 are considered significant. 1, major allele; 2, minor allele.

*

Predicted tagSNPs using the Tagger program (Paul de Bakker; http://www.broad.mit.edu/mpg/tagger/).

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